Key Features ------------ * **Finaletoolkit Support:** Implements most Finaletoolkit CLI commands (excluding ``gap-bed`` and ``delfi-gc-correct``). * **File Compatibility:** Works with BED, BAM, and CRAM files. * **Mappability Filtering:** Filters interval files based on mappability scores. * **Parallelization:** Supports multi-core processing. * **SLURM Integration:** Enables job submission to SLURM clusters.