Skip to main content
Ctrl+K

FinaleToolkit

  • FinaleToolkit Documentation
  • User Guide
  • CLI
  • API
  • FinaleToolkit Documentation
  • User Guide
  • CLI
  • API

Section Navigation

  • Basic Features
  • Window Protection Score (WPS)
  • DELFI
  • End-Motifs
  • Cleavage Profile
  • Frag File Utilities
  • Genome Utilities
  • FinaleToolkit Documentation
  • API

API#

  • Basic Features
    • coverage()
    • frag_length()
    • frag_length_bins()
  • Window Protection Score (WPS)
    • wps()
    • multi_wps()
    • adjust_wps()
  • DELFI
    • delfi()
    • delfi_gc_correct()
    • delfi_merge_bins()
  • End-Motifs
    • EndMotifFreqs
    • EndMotifsIntervals
    • region_end_motifs()
    • end_motifs()
    • interval_end_motifs()
  • Cleavage Profile
    • cleavage_profile()
  • Frag File Utilities
    • filter_bam()
    • agg_bw()
    • chrom_sizes_to_list()
    • chrom_sizes_to_dict()
    • frag_generator()
    • frag_array()
    • low_quality_read_pairs()
    • overlaps()
  • Genome Utilities
    • GenomeGaps
    • ContigGaps
    • ucsc_hg19_gap_bed()
    • b37_gap_bed()
    • ucsc_hg38_gap_bed()

previous

CLI

next

Basic Features

Show Source

© Copyright 2024, EpiFluidLab.

Created using Sphinx 6.2.1.

Built with the PyData Sphinx Theme 0.15.4.