API

• Basic Features
  • coverage()
  • frag_length()
  • frag_length_bins()
• Window Protection Score (WPS)
  • wps()
  • multi_wps()
  • adjust_wps()
• DELFI
  • delfi()
  • delfi_gc_correct()
  • delfi_merge_bins()
• End-Motifs
  • EndMotifFreqs
  • EndMotifsIntervals
  • region_end_motifs()
  • end_motifs()
  • interval_end_motifs()
• Cleavage Profile
  • cleavage_profile()
• Frag File Utilities
  • filter_bam()
  • agg_bw()
  • chrom_sizes_to_list()
  • chrom_sizes_to_dict()
  • frag_generator()
  • frag_array()
  • low_quality_read_pairs()
  • overlaps()
• Genome Utilities
  • GenomeGaps
  • ContigGaps
  • ucsc_hg19_gap_bed()
  • b37_gap_bed()
  • ucsc_hg38_gap_bed()