Quickstart

Getting Started

If not to be integrated into a workflow, FinaleToolkit is intended to be run directly from a terminal interface.

You can open the terminal and typing the following command:

$ finaletoolkit

Importing Modules

The FinaleToolkit package itself is divided by its API functions.

FinaleToolkit has the following modules:

• frag - fragmentomic feature genereation

• genome - utilities for genome tracks

• cli - command line interface

• utils - utilities that simplify feature generation

You can load all fragmentomics functions by using the following command:

>>> import finaletoolkit.frag as ft

If you want to load a specific function, you can do so by using the following:

Assuming we wanted to load the DELFI function:

>>> from finaletoolkit.frag import delfi