Workflow

This Snakemake workflow automates the extraction of epigenomic features using Finaletoolkit, supporting parallel processing, SLURM, and common genomic file formats. You can find and access the workflow here.

Contents:

• Key Features
• Installation
• Dependencies
• Quick Start
• Workflow Structure
• YAML Parameters
• Output File Naming
• Using Finaletoolkit Commands
• Mappability Filtering
• filter-file Command
• Notes