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FinaleToolkit

  • FinaleToolkit Documentation
  • User Guide
  • CLI
  • API
  • Workflow
  • FinaleToolkit Documentation
  • User Guide
  • CLI
  • API
  • Workflow

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Contents:

  • Key Features
  • Installation
  • Dependencies
  • Quick Start
  • Workflow Structure
  • YAML Parameters
  • Output File Naming
  • Using Finaletoolkit Commands
  • Mappability Filtering
  • filter-file Command
  • Notes
  • FinaleToolkit Documentation
  • Workflow

Workflow#

This Snakemake workflow automates the extraction of epigenomic features using Finaletoolkit, supporting parallel processing, SLURM, and common genomic file formats. You can find and access the workflow here.

Contents:

  • Key Features
  • Installation
  • Dependencies
  • Quick Start
  • Workflow Structure
  • YAML Parameters
  • Output File Naming
  • Using Finaletoolkit Commands
  • Mappability Filtering
  • filter-file Command
  • Notes

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