Installation

Reference the following commands for setup and execution:

$ git clone https://github.com/epifluidlab/finaletoolkit_workflow # Download the repository containing the workflow
$ cd finaletoolkit_workflow # Enter the repository folder
$ conda env create -f environment.yml # Create environment with relevant conda packages
$ conda activate finaletoolkit_workflow # Use environment for finaletoolkit-workflow
$ pip install finaletoolkit # Install finaletoolkit seperately through pip
$ snakemake --configfile params.yaml --cores 4 --jobs 2 # Run with parameters set in params.yaml