EpiFluid Lab The dark matter of the genome -- Understand the non-coding genetic variants by multi-omics inside and outside the cells.

Publications

First author (including shared 1st authorship) or corresponding author (shared corresponding authorship) papers from the EpiFluid Lab since 2019 are marked with “EpiFluidLab” tag.

The complete list of publications and their citations are available at Google Scholar

2023

Hailu Fu, Haizi Zheng, Xiaoting Chen, Matthew T. Weirauch, Louis J. Muglia, Li Wang, Yaping Liu
Genome Biology  ·  16 Mar 2023

2022

Xionghui Zhou, Haizi Zheng, Hailu Fu, Kelsey L. Dillehay McKillip, Susan M. Pinney, Yaping Liu
Genome Medicine  ·  08 Dec 2022
Zaili Luo, Mingyang Xia, Wei Shi, Chuntao Zhao, Jiajia Wang, Dazhuan Xin, Xinran Dong, Yu Xiong, Feng Zhang, Kalen Berry, Sean Ogurek, Xuezhao Liu, Rohit Rao, Rui Xing, Lai Man Natalie Wu, Siying Cui, Lingli Xu, Yifeng Lin, Wenkun Ma, Shuaiwei Tian, Qi Xie, Li Zhang, Mei Xin, Xiaotao Wang, Feng Yue, Haizi Zheng, Yaping Liu, Charles B. Stevenson, Peter de Blank, John P. Perentesis, Richard J. Gilbertson, Hao Li, Jie Ma, Wenhao Zhou, Michael D. Taylor, Q. Richard Lu
Nature  ·  30 Nov 2022

2021

2020

, Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Rizi Ai, Bronwen Aken, Jennifer A. Akiyama, Omar Al Jammal, Henry Amrhein, Stacie M. Anderson, Gregory R. Andrews, Igor Antoshechkin, Kristin G. Ardlie, Joel Armstrong, Matthew Astley, Budhaditya Banerjee, Amira A. Barkal, If H. A. Barnes, Iros Barozzi, Daniel Barrell, Gemma Barson, Daniel Bates, Ulugbek K. Baymuradov, Cassandra Bazile, Michael A. Beer, Samantha Beik, M. A. Bender, Ruth Bennett, Louis Philip Benoit Bouvrette, Bradley E. Bernstein, Andrew Berry, Anand Bhaskar, Alexandra Bignell, Steven M. Blue, David M. Bodine, Carles Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, Alan P. Boyle, Laurel A. Brandsmeier, Alessandra Breschi, Emery H. Bresnick, Jason A. Brooks, Michael Buckley, Christopher B. Burge, Rachel Byron, Eileen Cahill, Lingling Cai, Lulu Cao, Mark Carty, Rosa G. Castanon, Andres Castillo, Hassan Chaib, Esther T. Chan, Daniel R. Chee, Sora Chee, Hao Chen, Huaming Chen, Jia-Yu Chen, Songjie Chen, J. Michael Cherry, Surya B. Chhetri, Jyoti S. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal A. L. Cody, Candice J. Coppola, Julie Coursen, Anthony M. D’Ippolito, Stephen Dalton, Cassidy Danyko, Claire Davidson, Jose Davila-Velderrain, Carrie A. Davis, Job Dekker, Alden Deran, Gilberto DeSalvo, Gloria Despacio-Reyes, Colin N. Dewey, Diane E. Dickel, Morgan Diegel, Mark Diekhans, Vishnu Dileep, Bo Ding, Sarah Djebali, Alexander Dobin, Daniel Dominguez, Sarah Donaldson, Jorg Drenkow, Timothy R. Dreszer, Yotam Drier, Michael O. Duff, Douglass Dunn, Catharine Eastman, Joseph R. Ecker, Matthew D. Edwards, Nicole El-Ali, Shaimae I. Elhajjajy, Keri Elkins, Andrew Emili, Charles B. Epstein, Rachel C. Evans, Iakes Ezkurdia, Kaili Fan, Peggy J. Farnham, Nina P. Farrell, Elise A. Feingold, Anne-Maud Ferreira, Katherine Fisher-Aylor, Stephen Fitzgerald, Paul Flicek, Chuan Sheng Foo, Kevin Fortier, Adam Frankish, Peter Freese, Shaliu Fu, Xiang-Dong Fu, Yu Fu, Yoko Fukuda-Yuzawa, Mariateresa Fulciniti, Alister P. W. Funnell, Idan Gabdank, Timur Galeev, Mingshi Gao, Carlos Garcia Giron, Tyler H. Garvin, Chelsea Anne Gelboin-Burkhart, Grigorios Georgolopoulos, Mark B. Gerstein, Belinda M. Giardine, David K. Gifford, David M. Gilbert, Daniel A. Gilchrist, Shawn Gillespie, Thomas R. Gingeras, Peng Gong, Alvaro Gonzalez, Jose M. Gonzalez, Peter Good, Alon Goren, David U. Gorkin, Brenton R. Graveley, Michael Gray, Jack F. Greenblatt, Ed Griffiths, Mark T. Groudine, Fabian Grubert, Mengting Gu, Roderic Guigó, Hongbo Guo, Yu Guo, Yuchun Guo, Gamze Gursoy, Maria Gutierrez-Arcelus, Jessica Halow, Ross C. Hardison, Matthew Hardy, Manoj Hariharan, Arif Harmanci, Anne Harrington, Jennifer L. Harrow, Tatsunori B. Hashimoto, Richard D. Hasz, Meital Hatan, Eric Haugen, James E. Hayes, Peng He, Yupeng He, Nastaran Heidari, David Hendrickson, Elisabeth F. Heuston, Jason A. Hilton, Benjamin C. Hitz, Abigail Hochman, Cory Holgren, Lei Hou, Shuyu Hou, Yun-Hua E. Hsiao, Shanna Hsu, Hui Huang, Tim J. Hubbard, Jack Huey, Timothy R. Hughes, Toby Hunt, Sean Ibarrientos, Robbyn Issner, Mineo Iwata, Osagie Izuogu, Tommi Jaakkola, Nader Jameel, Camden Jansen, Lixia Jiang, Peng Jiang, Audra Johnson, Rory Johnson, Irwin Jungreis, Madhura Kadaba, Maya Kasowski, Mary Kasparian, Momoe Kato, Rajinder Kaul, Trupti Kawli, Michael Kay, Judith C. Keen, Sunduz Keles, Cheryl A. Keller, David Kelley, Manolis Kellis, Pouya Kheradpour, Daniel Sunwook Kim, Anthony Kirilusha, Robert J. Klein, Birgit Knoechel, Samantha Kuan, Michael J. Kulik, Sushant Kumar, Anshul Kundaje, Tanya Kutyavin, Julien Lagarde, Bryan R. Lajoie, Nicole J. Lambert, John Lazar, Ah Young Lee, Donghoon Lee, Elizabeth Lee, Jin Wook Lee, Kristen Lee, Christina S. Leslie, Shawn Levy, Bin Li, Hairi Li, Nan Li, Shantao Li, Xiangrui Li, Yang I. Li, Ying Li, Yining Li, Yue Li, Jin Lian, Maxwell W. Libbrecht, Shin Lin, Yiing Lin, Dianbo Liu, Jason Liu, Peng Liu, Tingting Liu, X. Shirley Liu, Yan Liu, Yaping Liu, Maria Long, Shaoke Lou, Jane Loveland, Aiping Lu, Yuheng Lu, Eric Lécuyer, Lijia Ma, Mark Mackiewicz, Brandon J. Mannion, Michael Mannstadt, Deepa Manthravadi, Georgi K. Marinov, Fergal J. Martin, Eugenio Mattei, Kenneth McCue, Megan McEown, Graham McVicker, Sarah K. Meadows, Alex Meissner, Eric M. Mendenhall, Christopher L. Messer, Wouter Meuleman, Clifford Meyer, Steve Miller, Matthew G. Milton, Tejaswini Mishra, Dianna E. Moore, Helen M. Moore, Jill E. Moore, Samuel H. Moore, Jennifer Moran, Ali Mortazavi, Jonathan M. Mudge, Nikhil Munshi, Rabi Murad, Richard M. Myers, Vivek Nandakumar, Preetha Nandi, Anil M. Narasimha, Aditi K. Narayanan, Hannah Naughton, Fabio C. P. Navarro, Patrick Navas, Jurijs Nazarovs, Jemma Nelson, Shane Neph, Fidencio Jun Neri, Joseph R. Nery, Amy R. Nesmith, J. Scott Newberry, Kimberly M. Newberry, Vu Ngo, Rosy Nguyen, Thai B. Nguyen, Tung Nguyen, Andrew Nishida, William S. Noble, Catherine S. Novak, Eva Maria Novoa, Briana Nuñez, Charles W. O’Donnell, Sara Olson, Kathrina C. Onate, Ericka Otterman, Hakan Ozadam, Michael Pagan, Tsultrim Palden, Xinghua Pan, Yongjin Park, E. Christopher Partridge, Benedict Paten, Florencia Pauli-Behn, Michael J. Pazin, Baikang Pei, Len A. Pennacchio, Alexander R. Perez, Emily H. Perry, Dmitri D. Pervouchine, Nishigandha N. Phalke, Quan Pham, Doug H. Phanstiel, Ingrid Plajzer-Frick, Gabriel A. Pratt, Henry E. Pratt, Sebastian Preissl, Jonathan K. Pritchard, Yuri Pritykin, Michael J. Purcaro, Qian Qin, Giovanni Quinones-Valdez, Ines Rabano, Ernest Radovani, Anil Raj, Nisha Rajagopal, Oren Ram, Lucia Ramirez, Ricardo N. Ramirez, Dylan Rausch, Soumya Raychaudhuri, Joseph Raymond, Rozita Razavi, Timothy E. Reddy, Thomas M. Reimonn, Bing Ren, Alexandre Reymond, Alex Reynolds, Suhn K. Rhie, John Rinn, Miguel Rivera, Juan Carlos Rivera-Mulia, Brian S. Roberts, Jose Manuel Rodriguez, Joel Rozowsky, Russell Ryan, Eric Rynes, Denis N. Salins, Richard Sandstrom, Takayo Sasaki, Shashank Sathe, Daniel Savic, Alexandra Scavelli, Jonathan Scheiman, Christoph Schlaffner, Jeffery A. Schloss, Frank W. Schmitges, Lei Hoon See, Anurag Sethi, Manu Setty, Anthony Shafer, Shuo Shan, Eilon Sharon, Quan Shen, Yin Shen, Richard I. Sherwood, Minyi Shi, Sunyoung Shin, Noam Shoresh, Kyle Siebenthall, Cristina Sisu, Teri Slifer, Cricket A. Sloan, Anna Smith, Valentina Snetkova, Michael P. Snyder, Damek V. Spacek, Sharanya Srinivasan, Rohith Srivas, George Stamatoyannopoulos, John A. Stamatoyannopoulos, Rebecca Stanton, Dave Steffan, Sandra Stehling-Sun, J. Seth Strattan, Amanda Su, Balaji Sundararaman, Marie-Marthe Suner, Tahin Syed, Matt Szynkarek, Forrest Y. Tanaka, Danielle Tenen, Mingxiang Teng, Jeffrey A. Thomas, Dave Toffey, Michael L. Tress, Diane E. Trout, Gosia Trynka, Junko Tsuji, Sean A. Upchurch, Oana Ursu, Barbara Uszczynska-Ratajczak, Mia C. Uziel, Alfonso Valencia, Benjamin Van Biber, Arjan G. van der Velde, Eric L. Van Nostrand, Yekaterina Vaydylevich, Jesus Vazquez, Alec Victorsen, Jost Vielmetter, Jeff Vierstra, Axel Visel, Anna Vlasova, Christopher M. Vockley, Simona Volpi, Shinny Vong, Hao Wang, Mengchi Wang, Qin Wang, Ruth Wang, Tao Wang, Wei Wang, Xiaofeng Wang, Yanli Wang, Nathaniel K. Watson, Xintao Wei, Zhijie Wei, Hendrik Weisser, Sherman M. Weissman, Rene Welch, Robert E. Welikson, Zhiping Weng, Harm-Jan Westra, John W. Whitaker, Collin White, Kevin P. White, Andre Wildberg, Brian A. Williams, David Wine, Heather N. Witt, Barbara Wold, Maxim Wolf, James Wright, Rui Xiao, Xinshu Xiao, Jie Xu, Jinrui Xu, Koon-Kiu Yan, Yongqi Yan, Hongbo Yang, Xinqiong Yang, Yi-Wen Yang, Galip Gürkan Yardımcı, Brian A. Yee, Gene W. Yeo, Taylor Young, Tianxiong Yu, Feng Yue, Chris Zaleski, Chongzhi Zang, Haoyang Zeng, Weihua Zeng, Daniel R. Zerbino, Jie Zhai, Lijun Zhan, Ye Zhan, Bo Zhang, Jialing Zhang, Jing Zhang, Kai Zhang, Lijun Zhang, Peng Zhang, Qi Zhang, Xiao-Ou Zhang, Yanxiao Zhang, Zhizhuo Zhang, Yuan Zhao, Ye Zheng, Guoqing Zhong, Xiao-Qiao Zhou, Yun Zhu, Jared Zimmerman, Jill E. Moore, Michael J. Purcaro, Henry E. Pratt, Charles B. Epstein, Noam Shoresh, Jessika Adrian, Trupti Kawli, Carrie A. Davis, Alexander Dobin, Rajinder Kaul, Jessica Halow, Eric L. Van Nostrand, Peter Freese, David U. Gorkin, Yin Shen, Yupeng He, Mark Mackiewicz, Florencia Pauli-Behn, Brian A. Williams, Ali Mortazavi, Cheryl A. Keller, Xiao-Ou Zhang, Shaimae I. Elhajjajy, Jack Huey, Diane E. Dickel, Valentina Snetkova, Xintao Wei, Xiaofeng Wang, Juan Carlos Rivera-Mulia, Joel Rozowsky, Jing Zhang, Surya B. Chhetri, Jialing Zhang, Alec Victorsen, Kevin P. White, Axel Visel, Gene W. Yeo, Christopher B. Burge, Eric Lécuyer, David M. Gilbert, Job Dekker, John Rinn, Eric M. Mendenhall, Joseph R. Ecker, Manolis Kellis, Robert J. Klein, William S. Noble, Anshul Kundaje, Roderic Guigó, Peggy J. Farnham, J. Michael Cherry, Richard M. Myers, Bing Ren, Brenton R. Graveley, Mark B. Gerstein, Len A. Pennacchio, Michael P. Snyder, Bradley E. Bernstein, Barbara Wold, Ross C. Hardison, Thomas R. Gingeras, John A. Stamatoyannopoulos, Zhiping Weng
Nature  ·  29 Jul 2020
, Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal, Bronwen Aken, Rizi Ai, Jennifer A. Akiyama, Omar Al Jammal, Henry Amrhein, Stacie M. Anderson, Gregory R. Andrews, Igor Antoshechkin, Kristin G. Ardlie, Joel Armstrong, Matthew Astley, Budhaditya Banerjee, Amira A. Barkal, If H. A. Barnes, Iros Barozzi, Daniel Barrell, Gemma Barson, Daniel Bates, Ulugbek K. Baymuradov, Cassandra Bazile, Michael A. Beer, Samantha Beik, M. A. Bender, Ruth Bennett, Louis Philip Benoit Bouvrette, Bradley E. Bernstein, Andrew Berry, Anand Bhaskar, Alexandra Bignell, Steven M. Blue, David M. Bodine, Carles Boix, Nathan Boley, Tyler Borrman, Beatrice Borsari, Alan P. Boyle, Laurel A. Brandsmeier, Alessandra Breschi, Emery H. Bresnick, Jason A. Brooks, Michael Buckley, Christopher B. Burge, Rachel Byron, Eileen Cahill, Lingling Cai, Lulu Cao, Mark Carty, Rosa G. Castanon, Andres Castillo, Hassan Chaib, Esther T. Chan, Daniel R. Chee, Sora Chee, Hao Chen, Huaming Chen, Jia-Yu Chen, Songjie Chen, J. Michael Cherry, Surya B. Chhetri, Jyoti S. Choudhary, Jacqueline Chrast, Dongjun Chung, Declan Clarke, Neal A. L. Cody, Candice J. Coppola, Julie Coursen, Anthony M. D’Ippolito, Stephen Dalton, Cassidy Danyko, Claire Davidson, Jose Davila-Velderrain, Carrie A. Davis, Job Dekker, Alden Deran, Gilberto DeSalvo, Gloria Despacio-Reyes, Colin N. Dewey, Diane E. Dickel, Morgan Diegel, Mark Diekhans, Vishnu Dileep, Bo Ding, Sarah Djebali, Alexander Dobin, Daniel Dominguez, Sarah Donaldson, Jorg Drenkow, Timothy R. Dreszer, Yotam Drier, Michael O. Duff, Douglass Dunn, Catharine Eastman, Joseph R. Ecker, Matthew D. Edwards, Nicole El-Ali, Shaimae I. Elhajjajy, Keri Elkins, Andrew Emili, Charles B. Epstein, Rachel C. Evans, Iakes Ezkurdia, Kaili Fan, Peggy J. Farnham, Nina Farrell, Elise A. Feingold, Anne-Maud Ferreira, Katherine Fisher-Aylor, Stephen Fitzgerald, Paul Flicek, Chuan Sheng Foo, Kevin Fortier, Adam Frankish, Peter Freese, Shaliu Fu, Xiang-Dong Fu, Yu Fu, Yoko Fukuda-Yuzawa, Mariateresa Fulciniti, Alister P. W. Funnell, Idan Gabdank, Timur Galeev, Mingshi Gao, Carlos Garcia Giron, Tyler H. Garvin, Chelsea Anne Gelboin-Burkhart, Grigorios Georgolopoulos, Mark B. Gerstein, Belinda M. Giardine, David K. Gifford, David M. Gilbert, Daniel A. Gilchrist, Shawn Gillespie, Thomas R. Gingeras, Peng Gong, Alvaro Gonzalez, Jose M. Gonzalez, Peter Good, Alon Goren, David U. Gorkin, Brenton R. Graveley, Michael Gray, Jack F. Greenblatt, Ed Griffiths, Mark T. Groudine, Fabian Grubert, Mengting Gu, Roderic Guigó, Hongbo Guo, Yu Guo, Yuchun Guo, Gamze Gursoy, Maria Gutierrez-Arcelus, Jessica Halow, Ross C. Hardison, Matthew Hardy, Manoj Hariharan, Arif Harmanci, Anne Harrington, Jennifer L. Harrow, Tatsunori B. Hashimoto, Richard D. Hasz, Meital Hatan, Eric Haugen, James E. Hayes, Peng He, Yupeng He, Nastaran Heidari, David Hendrickson, Elisabeth F. Heuston, Jason A. Hilton, Benjamin C. Hitz, Abigail Hochman, Cory Holgren, Lei Hou, Shuyu Hou, Yun-Hua E. Hsiao, Shanna Hsu, Hui Huang, Tim J. Hubbard, Jack Huey, Timothy R. Hughes, Toby Hunt, Sean Ibarrientos, Robbyn Issner, Mineo Iwata, Osagie Izuogu, Tommi Jaakkola, Nader Jameel, Camden Jansen, Lixia Jiang, Peng Jiang, Audra Johnson, Rory Johnson, Irwin Jungreis, Madhura Kadaba, Maya Kasowski, Mary Kasparian, Momoe Kato, Rajinder Kaul, Trupti Kawli, Michael Kay, Judith C. Keen, Sunduz Keles, Cheryl A. Keller, David Kelley, Manolis Kellis, Pouya Kheradpour, Daniel Sunwook Kim, Anthony Kirilusha, Robert J. Klein, Birgit Knoechel, Samantha Kuan, Michael J. Kulik, Sushant Kumar, Anshul Kundaje, Tanya Kutyavin, Julien Lagarde, Bryan R. Lajoie, Nicole J. Lambert, John Lazar, Ah Young Lee, Donghoon Lee, Elizabeth Lee, Jin Wook Lee, Kristen Lee, Christina S. Leslie, Shawn Levy, Bin Li, Hairi Li, Nan Li, Shantao Li, Xiangrui Li, Yang I. Li, Ying Li, Yining Li, Yue Li, Jin Lian, Maxwell W. Libbrecht, Shin Lin, Yiing Lin, Dianbo Liu, Jason Liu, Peng Liu, Tingting Liu, X. Shirley Liu, Yan Liu, Yaping Liu, Maria Long, Shaoke Lou, Jane Loveland, Aiping Lu, Yuheng Lu, Eric Lécuyer, Lijia Ma, Mark Mackiewicz, Brandon J. Mannion, Michael Mannstadt, Deepa Manthravadi, Georgi K. Marinov, Fergal J. Martin, Eugenio Mattei, Kenneth McCue, Megan McEown, Graham McVicker, Sarah K. Meadows, Alex Meissner, Eric M. Mendenhall, Christopher L. Messer, Wouter Meuleman, Clifford Meyer, Steve Miller, Matthew G. Milton, Tejaswini Mishra, Dianna E. Moore, Helen M. Moore, Jill E. Moore, Samuel H. Moore, Jennifer Moran, Ali Mortazavi, Jonathan M. Mudge, Nikhil Munshi, Rabi Murad, Richard M. Myers, Vivek Nandakumar, Preetha Nandi, Anil M. Narasimha, Aditi K. Narayanan, Hannah Naughton, Fabio C. P. Navarro, Patrick Navas, Jurijs Nazarovs, Jemma Nelson, Shane Neph, Fidencio Jun Neri, Joseph R. Nery, Amy R. Nesmith, J. Scott Newberry, Kimberly M. Newberry, Vu Ngo, Rosy Nguyen, Thai B. Nguyen, Tung Nguyen, Andrew Nishida, William S. Noble, Catherine S. Novak, Eva Maria Novoa, Briana Nuñez, Charles W. O’Donnell, Sara Olson, Kathrina C. Onate, Ericka Otterman, Hakan Ozadam, Michael Pagan, Tsultrim Palden, Xinghua Pan, Yongjin Park, E. Christopher Partridge, Benedict Paten, Florencia Pauli-Behn, Michael J. Pazin, Baikang Pei, Len A. Pennacchio, Alexander R. Perez, Emily H. Perry, Dmitri D. Pervouchine, Nishigandha N. Phalke, Quan Pham, Doug H. Phanstiel, Ingrid Plajzer-Frick, Gabriel A. Pratt, Henry E. Pratt, Sebastian Preissl, Jonathan K. Pritchard, Yuri Pritykin, Michael J. Purcaro, Qian Qin, Giovanni Quinones-Valdez, Ines Rabano, Ernest Radovani, Anil Raj, Nisha Rajagopal, Oren Ram, Lucia Ramirez, Ricardo N. Ramirez, Dylan Rausch, Soumya Raychaudhuri, Joseph Raymond, Rozita Razavi, Timothy E. Reddy, Thomas M. Reimonn, Bing Ren, Alexandre Reymond, Alex Reynolds, Suhn K. Rhie, John Rinn, Miguel Rivera, Juan Carlos Rivera-Mulia, Brian Roberts, Jose Manuel Rodriguez, Joel Rozowsky, Russell Ryan, Eric Rynes, Denis N. Salins, Richard Sandstrom, Takayo Sasaki, Shashank Sathe, Daniel Savic, Alexandra Scavelli, Jonathan Scheiman, Christoph Schlaffner, Jeffery A. Schloss, Frank W. Schmitges, Lei Hoon See, Anurag Sethi, Manu Setty, Anthony Shafer, Shuo Shan, Eilon Sharon, Quan Shen, Yin Shen, Richard I. Sherwood, Minyi Shi, Sunyoung Shin, Noam Shoresh, Kyle Siebenthall, Cristina Sisu, Teri Slifer, Cricket A. Sloan, Anna Smith, Valentina Snetkova, Michael P. Snyder, Damek V. Spacek, Sharanya Srinivasan, Rohith Srivas, George Stamatoyannopoulos, John A. Stamatoyannopoulos, Rebecca Stanton, Dave Steffan, Sandra Stehling-Sun, J. Seth Strattan, Amanda Su, Balaji Sundararaman, Marie-Marthe Suner, Tahin Syed, Matt Szynkarek, Forrest Y. Tanaka, Danielle Tenen, Mingxiang Teng, Jeffrey A. Thomas, Dave Toffey, Michael L. Tress, Diane E. Trout, Gosia Trynka, Junko Tsuji, Sean A. Upchurch, Oana Ursu, Barbara Uszczynska-Ratajczak, Mia C. Uziel, Alfonso Valencia, Benjamin Van Biber, Arjan G. van der Velde, Eric L. Van Nostrand, Yekaterina Vaydylevich, Jesus Vazquez, Alec Victorsen, Jost Vielmetter, Jeff Vierstra, Axel Visel, Anna Vlasova, Christopher M. Vockley, Simona Volpi, Shinny Vong, Hao Wang, Mengchi Wang, Qin Wang, Ruth Wang, Tao Wang, Wei Wang, Xiaofeng Wang, Yanli Wang, Nathaniel K. Watson, Xintao Wei, Zhijie Wei, Hendrik Weisser, Sherman M. Weissman, Rene Welch, Robert E. Welikson, Zhiping Weng, Harm-Jan Westra, John W. Whitaker, Collin White, Kevin P. White, Andre Wildberg, Brian A. Williams, David Wine, Heather N. Witt, Barbara Wold, Maxim Wolf, James Wright, Rui Xiao, Xinshu Xiao, Jie Xu, Jinrui Xu, Koon-Kiu Yan, Yongqi Yan, Hongbo Yang, Xinqiong Yang, Yi-Wen Yang, Galip Gürkan Yardımcı, Brian A. Yee, Gene W. Yeo, Taylor Young, Tianxiong Yu, Feng Yue, Chris Zaleski, Chongzhi Zang, Haoyang Zeng, Weihua Zeng, Daniel R. Zerbino, Jie Zhai, Lijun Zhan, Ye Zhan, Bo Zhang, Jialing Zhang, Jing Zhang, Kai Zhang, Lijun Zhang, Peng Zhang, Qi Zhang, Xiao-Ou Zhang, Yanxiao Zhang, Zhizhuo Zhang, Yuan Zhao, Ye Zheng, Guoqing Zhong, Xiao-Qiao Zhou, Yun Zhu, Jared Zimmerman, Michael P. Snyder, Thomas R. Gingeras, Jill E. Moore, Zhiping Weng, Mark B. Gerstein, Bing Ren, Ross C. Hardison, John A. Stamatoyannopoulos, Brenton R. Graveley, Elise A. Feingold, Michael J. Pazin, Michael Pagan, Daniel A. Gilchrist, Benjamin C. Hitz, J. Michael Cherry, Bradley E. Bernstein, Eric M. Mendenhall, Daniel R. Zerbino, Adam Frankish, Paul Flicek, Richard M. Myers
Nature  ·  29 Jul 2020

2019

Yaping Liu, Tzu-Yu Liu, David E. Weinberg, Brandon W. White, Chris J. De La Torre, Catherine L. Tan, Anthony D. Schmitt, Siddarth Selvaraj, Vy Tran, Louise C. Laurent, Luc Cabel, François-Clément Bidard, Girish Putcha, Imran S. Haque
Cold Spring Harbor Laboratory  ·  23 Oct 2019
Nathan Wan, David Weinberg, Tzu-Yu Liu, Katherine Niehaus, Eric A. Ariazi, Daniel Delubac, Ajay Kannan, Brandon White, Mitch Bailey, Marvin Bertin, Nathan Boley, Derek Bowen, James Cregg, Adam M. Drake, Riley Ennis, Signe Fransen, Erik Gafni, Loren Hansen, Yaping Liu, Gabriel L. Otte, Jennifer Pecson, Brandon Rice, Gabriel E. Sanderson, Aarushi Sharma, John St. John, Catherina Tang, Abraham Tzou, Leilani Young, Girish Putcha, Imran S. Haque
BMC Cancer  ·  23 Aug 2019
Guoqiang Li, Yaping Liu, Yanxiao Zhang, Naoki Kubo, Miao Yu, Rongxin Fang, Manolis Kellis, Bing Ren
Nature Methods  ·  05 Aug 2019

2018

Eric R. Gamazon, , Ayellet V. Segrè, Martijn van de Bunt, Xiaoquan Wen, Hualin S. Xi, Farhad Hormozdiari, Halit Ongen, Anuar Konkashbaev, Eske M. Derks, François Aguet, Jie Quan, Dan L. Nicolae, Eleazar Eskin, Manolis Kellis, Gad Getz, Mark I. McCarthy, Emmanouil T. Dermitzakis, Nancy J. Cox, Kristin G. Ardlie
Nature Genetics  ·  28 Jun 2018
Alvaro N. Barbeira, Scott P. Dickinson, Rodrigo Bonazzola, Jiamao Zheng, Heather E. Wheeler, Jason M. Torres, Eric S. Torstenson, Kaanan P. Shah, Tzintzuni Garcia, Todd L. Edwards, Eli A. Stahl, Laura M. Huckins, François Aguet, Kristin G. Ardlie, Beryl B. Cummings, Ellen T. Gelfand, Gad Getz, Kane Hadley, Robert E. Handsaker, Katherine H. Huang, Seva Kashin, Konrad J. Karczewski, Monkol Lek, Xiao Li, Daniel G. MacArthur, Jared L. Nedzel, Duyen T. Nguyen, Michael S. Noble, Ayellet V. Segrè, Casandra A. Trowbridge, Taru Tukiainen, Nathan S. Abell, Brunilda Balliu, Ruth Barshir, Omer Basha, Alexis Battle, Gireesh K. Bogu, Andrew Brown, Christopher D. Brown, Stephane E. Castel, Lin S. Chen, Colby Chiang, Donald F. Conrad, Farhan N. Damani, Joe R. Davis, Olivier Delaneau, Emmanouil T. Dermitzakis, Barbara E. Engelhardt, Eleazar Eskin, Pedro G. Ferreira, Laure Frésard, Eric R. Gamazon, Diego Garrido-Martín, Ariel D. H. Gewirtz, Genna Gliner, Michael J. Gloudemans, Roderic Guigo, Ira M. Hall, Buhm Han, Yuan He, Farhad Hormozdiari, Cedric Howald, Brian Jo, Eun Yong Kang, Yungil Kim, Sarah Kim-Hellmuth, Tuuli Lappalainen, Gen Li, Xin Li, Boxiang Liu, Serghei Mangul, Mark I. McCarthy, Ian C. McDowell, Pejman Mohammadi, Jean Monlong, Stephen B. Montgomery, Manuel Muñoz-Aguirre, Anne W. Ndungu, Andrew B. Nobel, Meritxell Oliva, Halit Ongen, John J. Palowitch, Nikolaos Panousis, Panagiotis Papasaikas, YoSon Park, Princy Parsana, Anthony J. Payne, Christine B. Peterson, Jie Quan, Ferran Reverter, Chiara Sabatti, Ashis Saha, Michael Sammeth, Alexandra J. Scott, Andrey A. Shabalin, Reza Sodaei, Matthew Stephens, Barbara E. Stranger, Benjamin J. Strober, Jae Hoon Sul, Emily K. Tsang, Sarah Urbut, Martijn van de Bunt, Gao Wang, Xiaoquan Wen, Fred A. Wright, Hualin S. Xi, Esti Yeger-Lotem, Zachary Zappala, Judith B. Zaugg, Yi-Hui Zhou, Joshua M. Akey, Daniel Bates, Joanne Chan, Lin S. Chen, Melina Claussnitzer, Kathryn Demanelis, Morgan Diegel, Jennifer A. Doherty, Andrew P. Feinberg, Marian S. Fernando, Jessica Halow, Kasper D. Hansen, Eric Haugen, Peter F. Hickey, Lei Hou, Farzana Jasmine, Ruiqi Jian, Lihua Jiang, Audra Johnson, Rajinder Kaul, Manolis Kellis, Muhammad G. Kibriya, Kristen Lee, Jin Billy Li, Qin Li, Xiao Li, Jessica Lin, Shin Lin, Sandra Linder, Caroline Linke, Yaping Liu, Matthew T. Maurano, Benoit Molinie, Stephen B. Montgomery, Jemma Nelson, Fidencio J. Neri, Meritxell Oliva, Yongjin Park, Brandon L. Pierce, Nicola J. Rinaldi, Lindsay F. Rizzardi, Richard Sandstrom, Andrew Skol, Kevin S. Smith, Michael P. Snyder, John Stamatoyannopoulos, Barbara E. Stranger, Hua Tang, Emily K. Tsang, Li Wang, Meng Wang, Nicholas Van Wittenberghe, Fan Wu, Rui Zhang, Concepcion R. Nierras, Philip A. Branton, Latarsha J. Carithers, Ping Guan, Helen M. Moore, Abhi Rao, Jimmie B. Vaught, Sarah E. Gould, Nicole C. Lockart, Casey Martin, Jeffery P. Struewing, Simona Volpi, Anjene M. Addington, Susan E. Koester, A. Roger Little, Lori E. Brigham, Richard Hasz, Marcus Hunter, Christopher Johns, Mark Johnson, Gene Kopen, William F. Leinweber, John T. Lonsdale, Alisa McDonald, Bernadette Mestichelli, Kevin Myer, Brian Roe, Michael Salvatore, Saboor Shad, Jeffrey A. Thomas, Gary Walters, Michael Washington, Joseph Wheeler, Jason Bridge, Barbara A. Foster, Bryan M. Gillard, Ellen Karasik, Rachna Kumar, Mark Miklos, Michael T. Moser, Scott D. Jewell, Robert G. Montroy, Daniel C. Rohrer, Dana R. Valley, David A. Davis, Deborah C. Mash, Anita H. Undale, Anna M. Smith, David E. Tabor, Nancy V. Roche, Jeffrey A. McLean, Negin Vatanian, Karna L. Robinson, Leslie Sobin, Mary E. Barcus, Kimberly M. Valentino, Liqun Qi, Steven Hunter, Pushpa Hariharan, Shilpi Singh, Ki Sung Um, Takunda Matose, Maria M. Tomaszewski, Laura K. Barker, Maghboeba Mosavel, Laura A. Siminoff, Heather M. Traino, Paul Flicek, Thomas Juettemann, Magali Ruffier, Dan Sheppard, Kieron Taylor, Stephen J. Trevanion, Daniel R. Zerbino, Brian Craft, Mary Goldman, Maximilian Haeussler, W. James Kent, Christopher M. Lee, Benedict Paten, Kate R. Rosenbloom, John Vivian, Jingchun Zhu, Dan L. Nicolae, Nancy J. Cox, Hae Kyung Im, , , , , , , , , , , , , , , , ,
Nature Communications  ·  08 May 2018

2017

Halit Ongen, , Andrew A Brown, Olivier Delaneau, Nikolaos I Panousis, Alexandra C Nica, Emmanouil T Dermitzakis
Nature Genetics  ·  23 Oct 2017
Yaping Liu, Abhishek Sarkar, Pouya Kheradpour, Jason Ernst, Manolis Kellis
Genome Biology  ·  20 Oct 2017
Meng How Tan, , Qin Li, Raghuvaran Shanmugam, Robert Piskol, Jennefer Kohler, Amy N. Young, Kaiwen Ivy Liu, Rui Zhang, Gokul Ramaswami, Kentaro Ariyoshi, Ankita Gupte, Liam P. Keegan, Cyril X. George, Avinash Ramu, Ni Huang, Elizabeth A. Pollina, Dena S. Leeman, Alessandra Rustighi, Y. P. Sharon Goh, Ajay Chawla, Giannino Del Sal, Gary Peltz, Anne Brunet, Donald F. Conrad, Charles E. Samuel, Mary A. O’Connell, Carl R. Walkley, Kazuko Nishikura, Jin Billy Li
Nature  ·  12 Oct 2017
Taru Tukiainen, , Alexandra-Chloé Villani, Angela Yen, Manuel A. Rivas, Jamie L. Marshall, Rahul Satija, Matt Aguirre, Laura Gauthier, Mark Fleharty, Andrew Kirby, Beryl B. Cummings, Stephane E. Castel, Konrad J. Karczewski, François Aguet, Andrea Byrnes, Tuuli Lappalainen, Aviv Regev, Kristin G. Ardlie, Nir Hacohen, Daniel G. MacArthur
Nature  ·  12 Oct 2017
Xin Li, , Yungil Kim, Emily K. Tsang, Joe R. Davis, Farhan N. Damani, Colby Chiang, Gaelen T. Hess, Zachary Zappala, Benjamin J. Strober, Alexandra J. Scott, Amy Li, Andrea Ganna, Michael C. Bassik, Jason D. Merker, Ira M. Hall, Alexis Battle, Stephen B. Montgomery
Nature  ·  12 Oct 2017
Ashis Saha, Yungil Kim, Ariel D.H. Gewirtz, Brian Jo, Chuan Gao, Ian C. McDowell, Barbara E. Engelhardt, Alexis Battle,
Genome Research  ·  11 Oct 2017
Fan Yang, Jiebiao Wang, Brandon L. Pierce, Lin S. Chen,
Genome Research  ·  11 Oct 2017
Huaibing Luo, Yanping Xi, Wei Li, Jin Li, Yan Li, Shihua Dong, Lina Peng, Yaping Liu, Wenqiang Yu
Human Molecular Genetics  ·  07 Aug 2017

2015

Fides D. Lay, Yaping Liu, Theresa K. Kelly, Heather Witt, Peggy J. Farnham, Peter A. Jones, Benjamin P. Berman
Genome Research  ·  06 Mar 2015
Anshul Kundaje, , Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis
Nature  ·  18 Feb 2015

2012

Theresa K. Kelly, Yaping Liu, Fides D. Lay, Gangning Liang, Benjamin P. Berman, Peter A. Jones
Genome Research  ·  07 Sep 2012
Yaping Liu, Kimberly D Siegmund, Peter W Laird, Benjamin P Berman
Genome Biology  ·  01 Jan 2012

2011

Benjamin P Berman, Daniel J Weisenberger, Joseph F Aman, Toshinori Hinoue, Zachary Ramjan, Yaping Liu, Houtan Noushmehr, Christopher P E Lange, Cornelis M van Dijk, Rob A E M Tollenaar, David Van Den Berg, Peter W Laird
Nature Genetics  ·  27 Nov 2011

2009

Xi Jin, Yi-da Yang, Kun Chen, Zhi-yuan Lv, Lin Zheng, Ya-ping Liu, Shao-hua Chen, Chao-hui Yu, Xue-yuan Jiang, Cheng-yu Zhang, You-ming Li
Journal of Hepatology  ·  01 May 2009
Xi Chen, Qibin Li, Jin Wang, Xing Guo, Xiangrui Jiang, Zhiji Ren, Chunyue Weng, Guoxun Sun, Xiuqiang Wang, Yaping Liu, Lijia Ma, Jun-Yuan Chen, Jun Wang, Ke Zen, Junfeng Zhang, Chen-Yu Zhang
Genome Biology  ·  01 Jan 2009